acidgenomes.make_ensembl_to_ncbi

acidgenomes.make_ensembl_to_ncbi(df: DataFrame, organism: str | None = None) → EnsemblToNcbi

Create an EnsemblToNcbi mapping from a DataFrame.

Parameters:

  • df (pd.DataFrame) – DataFrame containing ensembl_gene_id and ncbi_gene_id columns.

  • organism (str or None) – Latin organism name. Auto-detected from ensembl_gene_id if None.

Returns:

Deduplicated Ensembl-to-NCBI gene ID mapping.

Return type:

EnsemblToNcbi