acidgenomes.make_ncbi_to_ensembl

acidgenomes.make_ncbi_to_ensembl(df: DataFrame, organism: str | None = None) → NcbiToEnsembl

Create a NcbiToEnsembl mapping from a DataFrame.

Parameters:

  • df (pd.DataFrame) – DataFrame containing ncbi_gene_id and ensembl_gene_id columns.

  • organism (str or None) – Latin organism name. Auto-detected from ensembl_gene_id if None.

Returns:

Deduplicated NCBI-to-Ensembl gene ID mapping.

Return type:

NcbiToEnsembl