acidgenomes.make_tx_to_gene

acidgenomes.make_tx_to_gene(df: DataFrame, organism: str | None = None, genome_build: str | None = None, release: int | str | None = None, quiet: bool = False) → TxToGene

Create a TxToGene mapping from a DataFrame.

Parameters:

  • df (pd.DataFrame) – DataFrame containing transcript and gene ID columns (accepts transcript_id/transcriptid as aliases for tx_id).

  • organism (str or None) – Latin organism name, recorded in the returned object’s metadata.

  • genome_build (str or None) – Genome build, recorded in the returned object’s metadata.

  • release (int or str or None) – Annotation release version, recorded in the returned object’s metadata.

  • quiet (bool) – Suppress the warning logged when incomplete rows are dropped.

Returns:

Transcript ID to gene ID mapping.

Return type:

TxToGene