acidgenomes.import_tx_to_gene¶
- acidgenomes.import_tx_to_gene(file: str, *, organism: str | None = None, genome_build: str | None = None, release: int | str | None = None, ignore_tx_version: bool = False, ignore_gene_version: bool = False) TxToGene¶
Import transcript-to-gene annotations from a two-column file.
- Parameters:
file (str) – Path to a headerless, two-column (transcript ID, gene ID) file.
organism (str or None) – Latin organism name, recorded in the returned object’s metadata.
genome_build (str or None) – Genome build, recorded in the returned object’s metadata.
release (int or str or None) – Annotation release version, recorded in the returned object’s metadata.
ignore_tx_version (bool) – Strip version suffixes from transcript identifiers.
ignore_gene_version (bool) – Strip version suffixes from gene identifiers.
- Returns:
Transcript ID to gene ID mapping.
- Return type: